Scaffold Ga0211504_1051930

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211504_1051930

Scaffold Ga0211504_1051930

Overview

Basic Information
Taxon OID	3300020347 Open in IMG/M
Scaffold ID	Ga0211504_1051930 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	976
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_067
Coordinates	Lat. (^o)	32.1	Long. (^o)	17.7	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051181	Metagenome / Metatranscriptome	144	N
F092048	Metagenome / Metatranscriptome	107	N
F096219	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211504_10519301	F096219	AGGAG	LDKETLKKLTKDFPKSVVKKAPPGKFGDYVPHHIYTQRLVDVVPD
Ga0211504_10519302	F051181	AGGA	MDDLLEQAQENIKKVVDEQQTQTLYVVLQESLDELNQAEHLVKTYKELRDKAIKGLYNVGVSAQSLATTTELTRQMIHRIVK
Ga0211504_10519303	F092048	AGG	MIKIDMPRDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI

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