NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1054986

Scaffold Ga0211504_1054986


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1054986 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)942
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017556Metagenome / Metatranscriptome240Y
F069990Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10549861F069990N/AMKKLLYFLVVGVLFTSCQKEEFEIPTNYQFEMTGRTSQDINGYYHVSINSSEDQQSLHRFGAKVTNVDKFNLPTKVIWRCDAFWYTPDTLGHTYIEIGNVPTGESVWSWENFAVTGYGGMTVPIVNGTSHADP
Ga0211504_10549862F017556N/AMSYAKFKEGQAVSFPSAGTVGVRARKGGTITGVEKMYELKDENKRFYANGECKGDLTTFRELSNGEFKGYAYRCKTIQPKGYVAEIVMVEEFKLKLTTEEKVLNSYTIYA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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