NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1073540

Scaffold Ga0211504_1073540


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1073540 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)786
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003357Metagenome / Metatranscriptome492N
F033113Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10735401F003357AGGAGGMTRNSWIVKQVYTDAKENLGWLFKIVLLAGGFIAGIKLLMFFNVPKEIMFPVMWIAFILVAIYKWYSMKYDWKKDDKAYD
Ga0211504_10735402F033113AGGAGMDNKNTRKILLFIDGIGGINRQEMVHGTLYLKLDNDRDCDFIHTEIRKFYREFVNPEGGVNMYAVGDEFAFDFVPEDREAPVFSDEDFSGKEDMMPSDIDEQINGVWSEFAEEEMLANVDTMIDLENDAKEGR
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