NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1075391

Scaffold Ga0211504_1075391


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1075391 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045051Metagenome / Metatranscriptome153Y
F055646Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10753912F045051AGGAMLHTIEELIERLSLMKDKAIELHRVRNQFSELSGKQYDKVLAQAILDDIQSMAKLIAEDRQGNEIKTKMDEWKK
Ga0211504_10753913F055646GGAGMNDDDITFELDTTDTITLDLDSSSIGDITIDTSSWEDSFTTSPSSIYTSNGDVSIEGELTVGGVDVMQSIKDMQRVLGVVSRDIDKEEKYAGLKRAAEAYERELEKIETFETLKDSK

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