NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1079743

Scaffold Ga0211504_1079743


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1079743 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004856Metagenome / Metatranscriptome421Y
F020816Metagenome / Metatranscriptome222N
F035272Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10797431F020816GGAGGMKVYEITVSTTVQIDSEDDYCTSVEHAEDIMWDRWGVYKDDLKITNVEIWEVDDDNI
Ga0211504_10797432F004856AGGAGGMNVDSDKPKFIEARYSAYLSWDLEDLGIDWDKVEDWDLQRADLHITFKDGTEKVYEQWEDLNIDYKHNFEEVLILDENWGKVEGLN
Ga0211504_10797434F035272N/AMTYKQWCDFRELLNILHIEVESKICDVKVEEAFDDVWDMVDEIDTTQEIT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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