NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211505_1003585

Scaffold Ga0211505_1003585


Overview

Basic Information
Taxon OID3300020352 Open in IMG/M
Scaffold IDGa0211505_1003585 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4537
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039351Metagenome164N
F060351Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0211505_10035852F039351AGAAGMSRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSMSRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEVGFDFIVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYNVLDRYKHKLILLGGIEKIEPDFTCYLKIPSITEFFYPDFEDTTIFGDYTHFEKYSDNDKRGAMKLWELWEHKHNFWKEHPEHFASATDQVHPNRKATKALAEFIHNHIS
Ga0211505_10035857F060351N/ATKYDDMVWKILCGMPIEVFDEDDDTVWENETWELVKVRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSDDITKLSHDIFNNILEKFTKDKLIRKRPENIRKTFQLV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.