NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211505_1004150

Scaffold Ga0211505_1004150


Overview

Basic Information
Taxon OID3300020352 Open in IMG/M
Scaffold IDGa0211505_1004150 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4151
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032261Metagenome180N
F087234Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211505_100415012F087234AGGVMTETEMKRKDANTKDFSDLCSSCLVASVEALMEMDGMVTDIETIQLFDEKEVDYSAGDGIIKYVQQDYDFEDNY
Ga0211505_10041508F032261AGAAGGMNIDTEADYVLEAYWWSHKLVNNVSRRHKKFVLAYITAYRDYQDDESEFLQLTEMLQLKDKLVSVYGSHPDGEVVVELTIRQEYINV

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