NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211505_1009417

Scaffold Ga0211505_1009417


Overview

Basic Information
Taxon OID3300020352 Open in IMG/M
Scaffold IDGa0211505_1009417 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556084-ERR599144)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2644
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012239Metagenome282Y
F052947Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0211505_10094171F012239GAGMLVDNRFELEIPTHIAFTLYKNDYIDNLIISKVKKECRNESKRKNEFIVSLEEFQHAIQTSTFLRAELKKTLDQDLLPNPNFKPNSIFFLQSIINRLPNLNKITFKISDEKIFSRLVKVDGGREIVSFHFNIIEGTFDLTKILDRVQLDTFNKRFMAVGIMKNKYLERTSYFYIKATTLFDI
Ga0211505_10094174F052947N/AMRALFLEKLIKKFPNHYQLGAAVSRYYQLRQSKLTKEECEEIVLNSTFSFN
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Institute for Fundamental Biomedical Research
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