NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211613_1000241

Scaffold Ga0211613_1000241


Overview

Basic Information
Taxon OID3300020353 Open in IMG/M
Scaffold IDGa0211613_1000241 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17202
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.896Long. (o)-140.2861Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F019227Metagenome231Y
F021858Metagenome / Metatranscriptome217Y
F022974Metagenome / Metatranscriptome212Y
F029555Metagenome188Y
F039176Metagenome164Y
F062153Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0211613_10002411F000615N/AMCRIRCFYEGFEEGTYGWAEMIMSYDDDIAGFIKHWSCGGKRMVITEHIEIG
Ga0211613_100024114F021858N/AMIDVNKFENRIVKFKRISEGVEKVSHAEIRRIDYDTSSAMPRSVTARFVGPPLNAIMTLNYDEERKTFRGGLGPDIIESDFNIEEYIKDSQLGSGNETVVRSRRRGRAKF
Ga0211613_100024119F029555AGGAGMSDYKNGYRSEVARYIRIPIERKEYEEYVETRDLVDLAGRIERGEPHEVNPNYGGQGYTYLYPETKDLGRLKVTPVEDTWKLEWENLHG
Ga0211613_10002412F022974AGGMENNETYYIAKLSKKGEHLSSEIHKTLEAARLWAMKETKLLVSDTFLRKCKADDVVVEIDEHFFGYEISAEELIKNSKKVLINT
Ga0211613_10002413F039176GAGMIVDRESEFGGIDLSLNRSLEELISSYFEAHGAGIELDEDTRPEELDAYYALENYLADMGAI
Ga0211613_10002414F062153GGGGGMRIILNGKVAKNVTVTKHEGKYIGYSLRNNSGKKWSLVRNRKDDRYLGVVNHGSMYNHKFRGYEWLSDETGDLVGVC
Ga0211613_10002419F019227AGCAGMICSYCYKTQIAVKHDVGHWWNNPEDSVYVCSDDCYTKLEKLVKDGTWMDHKPEAIFGKKKHKSPSFDKPSPRDKGPKSVTDKQFSADLGKFMT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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