NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211608_10032361

Scaffold Ga0211608_10032361


Overview

Basic Information
Taxon OID3300020354 Open in IMG/M
Scaffold IDGa0211608_10032361 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000408 (ERX555905-ERR599164)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1281
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5082Long. (o)37.9202Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028833Metagenome / Metatranscriptome190Y
F030785Metagenome / Metatranscriptome184Y
F090512Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211608_100323612F090512GGAGMKLRYIVGIAYLSYIGMMGGTIIVEAIIVGLVLGMYDFLFNDRIV
Ga0211608_100323613F028833N/AMGSEKVTYMWSDAVIDNIARKVAEEPMEDVPQHVIDEERGDMIRQMRKEQAQMEMYDDPYLNWSGHR
Ga0211608_100323615F030785N/AMMKKMRTATVEILGKGEKVLGSRTSGEYMVRRFEDGIEMGGEFHYTLVEAGAAVRNWEKFGIKEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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