NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211611_1011803

Scaffold Ga0211611_1011803


Overview

Basic Information
Taxon OID3300020357 Open in IMG/M
Scaffold IDGa0211611_1011803 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000686 (ERX555950-ERR598956)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_123
CoordinatesLat. (o)-8.896Long. (o)-140.2861Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078572Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211611_10118031F078572N/ARDAFVVRDANGQTNMIPSQRERPMAMGDGTFMADNAFRESVPMMSYTPEELGINMDAYPMATDTALAIAAQDKQQTGEMTSMTPSEEVTLQESSNPFLRVVKEDEYSGGVQFNAEGNLIQHHAYDILKGLILVGIGIYVGKNWF
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Institute for Fundamental Biomedical Research
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