NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211506_1004827

Scaffold Ga0211506_1004827


Overview

Basic Information
Taxon OID3300020365 Open in IMG/M
Scaffold IDGa0211506_1004827 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4108
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8151Long. (o)63.5046Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006772Metagenome365Y
F040392Metagenome162N
F044802Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211506_10048273F040392GGAMCYCTKAIYRAVTEKQTLASIKTAHHYGGSFLSKIAGAALAGDPRNRDRVLQAFPEIIAKYGPGSAFYNEYF
Ga0211506_10048276F044802N/AMSDPTALYRAKENLYMMATCPTWYDHLDQIEAAMAEQDRIYKIRTAAGWDLDEGGWYAPHPENPDEMIPEWEWECETGGPLPEDVK
Ga0211506_10048279F006772AGGMERLNKAIQTATTGDLQRAAMFLEGAREVRAGCTNQRAQARRAQSTAWKKKVDDSITW
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