NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211703_10028497

Scaffold Ga0211703_10028497


Overview

Basic Information
Taxon OID3300020367 Open in IMG/M
Scaffold IDGa0211703_10028497 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000508 (ERX556112-ERR599005)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7887Long. (o)-17.9142Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F055651Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211703_100284972F001205N/AMFEQVIGDWPRHARFILTSCDDKYFLKYFPRFYKTYTEHWDLPIHLHIIDPSAESLKKLKQLKLTFTHCETNTDVLKWPYSYETYCQAQRFILLGHNLNKNQSVIVADVDSYALRQPSDKQQNLLGSDMAFTEYNGRLMATFCNFHHGRRQQAKKAAITMTKLIKETDMIGVDQFVIKEIFSKYSYNRLQHRVWIRHLDVKTKEDLLQHNECLIYHEKGTRGKGKGMKVSWTDIGL
Ga0211703_100284973F055651AGGAMDRYRVIEKFAKNNAWTQGLELGVWVGVTTFWLMKNTDLSMTCVDAWEVQDDNPEYDWQYNK
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