NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10006289

Scaffold Ga0211656_10006289


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10006289 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4869
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068147Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0211656_100062892F068147GAGGMKKGEKDWDYQFVSDCEIVNVFIPKNTHLSGHEELKQKLQMLQQVECDNHLTSSIVNLYNTSSINWIEHVRKMGHKYVAFWFDGCWPKTDGLEKKILNYIKRLEKKDWITAVHPKFLDSLMLLNIDEFIAWPAKAPNFQDYEFWAENWIGDCTVELSLTIQRNIVVGAPQTDPQNFLNGLMGKKYTDHTIARGARVIIKRKNIPSSPVYFVNTEPSSPKVAQYIKNTVFKQYVGATAGFKLLYYAYTYGLDIDSTKFVWYDFDAHSIEFKRLMVEKWDGNDYPAFVKQWCEDNPDANTQLLRFVGKQWLNIVEQFGGMDNWLDFWVQVKLCKHEFIEVDLVQNHDKITELLDNNSSTFFWASNIYSYVLLKVMSEPFTLENSFANLITRLQQINKCWFSGTDPNDNDLTCDVKWVLGYSTNDSIGTGI
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