NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10007826

Scaffold Ga0211656_10007826


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10007826 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4265
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007052Metagenome / Metatranscriptome359Y
F016675Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0211656_100078262F007052N/AMVVKDERRLTLTRRKMKNNETYFVARLKNKGKFLSAEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRVA
Ga0211656_100078267F016675N/AMRNFEVDYETTVPPWHTGHEKYEAEDLDTAKEMFRSKHEAARIYKLTEVLYDQRFAT

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