NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211682_10068899

Scaffold Ga0211682_10068899


Overview

Basic Information
Taxon OID3300020376 Open in IMG/M
Scaffold IDGa0211682_10068899 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023243Metagenome211N
F054160Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211682_100688991F023243N/AAQTGLLRVTESMKQKQEWWHGYKGTLEDKIAKSISGAMAEIALCVYLKTPFEFHTNVGSAPDVKYKNYNIQVRSQTPKKNNNNSLIIRPGGVKPNEIYVFVLSEAPKFTIKGFINSSAVIGKDDYLTDFNLARPKVWAVPLKILNPIILLKDESLN
Ga0211682_100688994F054160GGAMKTFEKFHTDLLNNKVLSANEKVVYIICKSFENAPMGCRISHKYLMDRTKIKTRKTLIKILDRLTMFGMLARKQIENS
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