NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211647_10022769

Scaffold Ga0211647_10022769


Overview

Basic Information
Taxon OID3300020377 Open in IMG/M
Scaffold IDGa0211647_10022769 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2494
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037769Metagenome167N
F073646Metagenome120Y
F088913Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211647_100227691F073646N/ANEEEKVMLQSEYLELAIELYDIYSDSNIHHKKWLTVKELEKCKRGPGFVSRVKRMKGKMSELHPVFVDFVNTQRQYRSCNTPQQWSCKFDKWLQDEYEFNKEELDELQADRGRQI
Ga0211647_100227692F037769AGAAGMSYRQTEGDKSDEKLLRRLLSEKMPEKDAKKIINHVFSDLIKWTYEDAVFHLTQIFNFTDEESDQLIKEYDILSSTTKEVIMNPPPSFEATAPRDVNDYKANLWQARKLLVEAKKLISATALTPRDYNNSTDFEEAIVQRMELQSNFVNINKYIDDHLTFAKNYTPPGK
Ga0211647_100227697F088913N/AMASNYQPKYKVNDRVRIRYVLKTSNRYVMLNGKAVPTKIRKGIIKEVVAKENSCGAKVPHYQVLWDHQSRPSLISQHRIELESP
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