NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211647_10044027

Scaffold Ga0211647_10044027


Overview

Basic Information
Taxon OID3300020377 Open in IMG/M
Scaffold IDGa0211647_10044027 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1664
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003043Metagenome511Y
F013945Metagenome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0211647_100440272F013945N/AMLHLSTKEVVLSIEKAELEINHGIIYQKYPNFFGNTFEFNFDKKENFERLENQTDLNRLKLSKHDEDMKRLTVFFMNSNITNALAKKFRTDLKFDSVDVWIDGKGYKLPPHLDDKRIKLHLQVYLSNNNEGTSLYNPQGEMLYTFPFKVNYGYALYNGAYSYHGVEEVEEDGRTSLYVRY
Ga0211647_100440273F003043GGAMKILITGGNGSLANSLKEYIDGDYYGKDMLDVADRNCVRNLQIYDILIHTATGNRKINDNLPLLFSKAKKVFAFTSKQGTFLNWKKPGPIDYGLEKLTLNFLVYRHNIENHNAQVFEPGHMETPEQYNAIAKKFSEIYLQWTFEKNMIYDLSADRYVSY
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