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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020379 Open in IMG/M |
| Scaffold ID | Ga0211652_10000015 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 62460 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 46 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_102 | |||||||
| Coordinates | Lat. (o) | -5.2476 | Long. (o) | -85.3343 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211652_1000001553 | F089156 | N/A | MLIIQFNDYIDPANFPVEIVQSFKHNTFLIDCEISEYDVISAITSTYSVSSMQSNEDCAYIDVYERHTTSYTTVSPEDTLAPLIEKLDLLAVQEPKILCFSWQMDRNYIVDYRIEQLIKAGHMVVCAGGNKDLPVIDISPVAVDGVIRVGGNKHNGYYQNWIDIYDVIDPTEPNSNKAVHNICTKMVHKQLELDYELAYYSDSSVRSAPWPLRLAQTPSNEAKYYEFNPVSNLRYCAGEHLIPVRPGDQVSVLYGGVQLEDYVDARYVDMGVEMPRGITFNIDSGWLYGTFKFKTNMFHRFQADINGQLFEYHMISCDADNKLTYDDVKHKYFNRPYDAPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYREFE |
| Ga0211652_1000001554 | F034245 | GGA | MRGVTFSEFGNGQNVDMFVQAPDVIPRTPFIEAIETAKKIRQKFTKDLYVWCDYSVQHIYSQIAMQGFKMAGIDFVAAIPVLSNNLSKRENDCSIAYCEARGIKYELFPIDVPALFDGEEFEYYGEKFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSNSDWTRTKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVDMYSSWMFTQSYGEVLKSSTQEFVDNAPHRYYQYEVRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDNTLRQRLAPFGPLTLKYASLQYTVKVDTRLKEMLEKHHETNFDFINKLF |
| Ga0211652_1000001557 | F022909 | GGA | MDDINNKEILRTFFEGKIGCIEYSDKWLPQLEKFCSIAKDCGYENNSSPEAMKVDEIQYHCMVHIPTNEIYAVAGVQYMPEYKDGYYRIWTRLCRIPKDDIPMTRTRRYGRGEMPEFDGLLYFNCEWATKQPNFKATFGTTLANKAYADNYVRSSNTITDYVKRNWWLKKGIAEPEGITEFYSVPQVVWRMYFNKFKELS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |