NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10003141

Scaffold Ga0211652_10003141


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10003141 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5196
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002902Metagenome / Metatranscriptome522Y
F032815Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100031411F032815N/AMQRNFILTDVMKTGFHMELENFISMNTLENQKFEMTGEYYSLHNYDLDAYDRKFAMIDTRWANERIKDNKEFHAELRRRCDLLHSQGFVFIKTNPWESLENIKNTPQHPEIDIAHIKWSGGVSWFWFYMYNKHHDKRDKFTQWDWGI
Ga0211652_100031414F002902AGGAGGMAGIAQGNGGKAGTSNGLGIRTRVINLAKSNMTETELTAALEYLAAGDVAGTNDAHTIAGVAPLTESGIFTSGTTDNVQVALQGTGAFTAASNFGTGSTGVTSSLLADFIAHP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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