NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10037430

Scaffold Ga0211652_10037430


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10037430 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1455
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046625Metagenome151Y
F069319Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100374302F069319N/AMLNNYTFKPTELPKKYRIQIDNIIKDVIDSKTDMYWKNYTDEEFNIDEQTAISVSCDGDDVKVMSTIYHREFFGEGVYRLWNRFLYSKDFRETGGSKKRDGEHINHPVLNQQIDFVEKLNPKFYFISRQRKNTRWLKYYFDTFNKEYNRNLVVNDNQYWVCGGKKENCLQTIIYPKDMEVPLKSYK
Ga0211652_100374303F046625N/AMMYENFIIDDFLSDNELNSFTYNNKEEFKSSTGNLILYYQKLLTSISIKIAKHIGKFSIRDAHIYDLKQPYKLHCDSGKAKTSHYTIIVPLDKQPQGGIFIMNQWADIAYSLDDYYTQDWQSVLTFEQRKEKIKEFDSNISLPDSLDFKHIKDKRGFSVKEYFTYNFNQAIMFPSKFFHCSQNVENFTNKKSLAIFTDVK
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