NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10000690

Scaffold Ga0211686_10000690


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10000690 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20922
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (17.39%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004370Metagenome / Metatranscriptome441Y
F064779Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_1000069023F004370N/AMYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLDSDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKEIEKDADLIKWNCGICKAPIKSRMDSKKVENFVCSKCTKAHNSRNRSVDGRIIDTSIKFTKHCKHLLKKEQREFMTYAKKSSKA
Ga0211686_100006903F064779N/AMNRLENSSLAENLTFHNHDFKAAMEDIEKVCGPVMYTDPDVDEKTQNEWEMMTEDGTPFTIYDYKEYREYDKTEKIRWHIASGNRFGSKKGYEELKRGFHLHPKIEYNI
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