NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10001704

Scaffold Ga0211686_10001704


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10001704 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12516
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F011006Metagenome / Metatranscriptome296Y
F015148Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100017041F015148N/AMDWYSPEEYKEYECTECGTEIDKAGVCSRACHDASMI
Ga0211686_1000170414F002629N/AMKVNEAAWEKLKKQIEYYTEADTSISDISINYQIKETKNRNYLRLNIIIDKWDKITG
Ga0211686_1000170426F006815N/AMDTNYSKETAESKFDEYTYRIEALCNRIEELKAKIEVSQILKQNG
Ga0211686_100017043F011006N/AMKKLIHKYLVNKSIKPYKVIALSTGVIVEHYRNGKLKTEYYE
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