NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10003216

Scaffold Ga0211686_10003216


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10003216 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8530
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037811Metagenome167Y
F077492Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_1000321611F037811AGGAMKTSEVYEGLVDNKLYNTKLHKGKPRGYYDPSPVEVFFTKIGQEIYKYTDNNQHKTLMSDEDWITHCDTANKCVRFGTLYGPKALEDFKPEELTVVRAFLRMKDKWI
Ga0211686_1000321618F077492GAGMSNKLGLTLEERTVFYYTALNEKRVGEVRQYDPIAGLMILRDPMLNKQIEFLWNSSSSKWKGLGLEAGYVAEVSFDTPITKQTDSAVPAKATSETRFPT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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