NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10005431

Scaffold Ga0211686_10005431


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10005431 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6140
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004990Metagenome416Y
F008915Metagenome / Metatranscriptome326Y
F015659Metagenome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_1000543111F015659GGAMKLGNLQDAIKEFRDNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGQRMSIQTESTELANGSHKFKANIYIDDRLVSVGESKQMKNGDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPPAKEIPKAAPIVKLVPKVKANIESLANDWIEVLKKTAETSNSLSNYEKNLNVMRKEYISDLHLIWSDLIQQARIDSEYLKQQKLITNRKI
Ga0211686_100054313F004990GGAMYGDLKKPCCVCKKGADLNEKGKRYCADHYALHVLGKSMSQIDKELGVKK
Ga0211686_100054316F008915AGGMFIGAKIKRVIMSDNITLDLYELHSASHLGILRCLESIKNKEKWGYNYKGSLNDQIAKSVSGAMGEVALAKFLGIKFEYHCNVGGIPDLIYKDLKVQCRTQLPKNNNSLIIRPKANCGELYALVIDEAPIFKILGFVNSTHVLGTEKFLTNFGLDRPACHSVPPEKLTPIFLLKNGTWN
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Institute for Fundamental Biomedical Research
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