NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10009670

Scaffold Ga0211686_10009670


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10009670 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4296
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F017335Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100096702F017335N/AMNIKSLTLKNKLSIENTGEQYFDLTAPSFKYKRELGVKALHYVTQDQVGRIDKVSEKYFGTGQYIDAICVINNIFNPFSIEEGDILAIPQLKSENLVYKRPNPASRPSTTLSTYVDTGQQSEADQSRIQRLTQKAKTKKTGVKAPIPPNMLQQGQAAKVFEGGKILLGANLPTRNSTNTE
Ga0211686_100096704F004606N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHMFENRARKMILKADDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEVREISARPFFKGPLSIDSVREFDARYKKGWLDKFEKSNLDINKYLNSLG
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