NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10015493

Scaffold Ga0211686_10015493


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10015493 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032042Metagenome181N
F060346Metagenome133N
F076503Metagenome118N
F090875Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100154932F076503AGGAMMTIETYGELCDNSNFEVVCEDEDNDAVWVTGNPNSEDFTFKTWDEVKIELSKYFEDIIEISAV
Ga0211686_100154934F060346GGAMALDMEEIVGDSQFHKSVMYSYNDRTHSFMFYTPSGDGKQIVPIGMFSPIIEEDIPYDPAALMEMIADFMSREKHTFDIETI
Ga0211686_100154937F090875N/AMSSQELELCGDRLDSVRDLLELLPNEIGSWKYAYWYKVYTYLDEKLEAAENEM
Ga0211686_100154939F032042AGGAGMDKLHFSIGDRVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPLDYNGPWIADLDNGHWAYGSQISLLKGHNEYG
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