NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10020829

Scaffold Ga0211686_10020829


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10020829 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2702
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024797Metagenome / Metatranscriptome204Y
F064641Metagenome / Metatranscriptome128Y
F091005Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100208292F024797N/AMSEFFRTQMGRKLIDGDIPNLVKVLERIAIQMERSNKLEEKKFLLEERIQKLTIKEANKN
Ga0211686_100208294F091005N/AMASIKLIPGFESFNENDNTVDNLNSMANTDLERIADYADMIKDRMSQGQTLDAWMYSKISDSVKNLNSVHDTMDGNDGVTEAEKHEFNPNETAERLKRRETQNIERFRAAQDREDPFAVQYYQLRISLDKIDLQRLKIQTQIHGLKKKFKK
Ga0211686_100208296F064641N/AMDPQEDKDANAIRHYKGTIKQFKDMFDDLAGGKDTNAYDSPVRQGFDVHPTRDPGVISPHWEEGHEDEKTQNENHVTNFKNFK
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