NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10023847

Scaffold Ga0211686_10023847


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10023847 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2508
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021402Metagenome219N
F090862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100238473F021402GGAGGMITTNLTIDELDRFLQISSFCDSKMPKVKAKSLPTMYKVIENAIGVGEDAESIKNLDKYAATLKITLTSRQITIYDFVLLVMLDAKASDRELIYLRNFPHRLSLRKMKRMYLDWSHTKIGYEYEKALKNVCKYANRNLKKYI
Ga0211686_100238474F090862GGAGMTTYVDPKLVAKALARVTKSSNVYYSSAVKKIKKNRKEYYQNKETKTLQKSLSKDRFNTYLEELYKNDND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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