NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10076913

Scaffold Ga0211686_10076913


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10076913 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1357
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F003777Metagenome / Metatranscriptome469Y
F041862Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100769132F003777N/AMSNKQKPNIITPFNDRKRFKDLIREVISDTTIFTHTPDSISLSGVLFTITLANKKFVYEDVKVDNLADYIDVYLQGVKKSSAFYSVTDDGTNIILQTNETITQRPDLIVSSDFLVKGKIVAR
Ga0211686_100769133F002188N/AMALKDLEQILKQVHEPDEYKLIAHDMDHSLYWIWKLENAKLKDLDEKLRVFRPEHARFDIFINGQYILETDYVFEIPSRDIWVKFKKSNFGYTLQTSDDIKIEGDIQVQ
Ga0211686_100769134F041862N/ATEVGEGSQRIVRTTFTMMVNAYLLPEQFNNESTHKKSLTPKKVVWGMETDLTGLGNGGTNSAVKTQMYNEYSDIIDFMSIRGSKLTTYVDADSVKLTSVDLPKLPPELIGVFNTDDWFRVYVNGVFVANTKYTYEEIGSEISFNFNTGSLSEGGTYPTDLISTATDLGYILEVGDEIGITGKFIEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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