NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10120773

Scaffold Ga0211686_10120773


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10120773 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1076
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039351Metagenome164N
F073764Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0211686_101207732F039351AGAAGMSRIMVTGDSWSAGEWDPTLTPEDTRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLNCLMTHEVGFDFVIYVKTCATRDFKHLTPEHGLVYTTTDLFEKIKLVKELEYNILARYKHKLILLGGIEKIEPNFDCNFVLPSITEFFYPDFKDTTIFGDYTHFEKYSDDDKRGAMKLWELWEHKHNFWKEHPEYFASATDQVHPNRKATKALAEFIHNHIS
Ga0211686_101207733F073764N/ADIPVATITKIATIVRKENMDEEQEKWEEIKEYVEACM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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