NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211646_10041612

Scaffold Ga0211646_10041612


Overview

Basic Information
Taxon OID3300020383 Open in IMG/M
Scaffold IDGa0211646_10041612 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1771
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101917Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211646_100416122F101917GGAMATQNTFVIEYGLSVGSTEVITSAGKIVASALSTIDSDDVSEGSTNLYHTSARFNTAFDTRLGSAVINGGTF
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