NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211596_10015062

Scaffold Ga0211596_10015062


Overview

Basic Information
Taxon OID3300020384 Open in IMG/M
Scaffold IDGa0211596_10015062 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000441 (ERX556023-ERR599110)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3112
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_065
CoordinatesLat. (o)-35.2528Long. (o)26.317Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018264Metagenome / Metatranscriptome236N
F038407Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
Ga0211596_100150622F018264N/AMTIDRHHYKYVHIHSSNHKSGNNFRIKVPHGLNACSRVALQNFSIPNTIGNSYGPLSKLYWVEFVKDNATSGVGDWSKKIFYIDLSDIPSYTQNSQIADLIHAKFQNEVYDYDTGTIGTHQFTLEDPLQIDFAYDENHYIFQYSISQTTLTQDVGVKVFVPAIFENDVGLWEHFGFVNETGMIGINSRSYFSTPDQSLEALNRDFKTIYPQSTDIPAGVDGVPTYKTLNEFWENGPGRYMRIAGVPNAENNLDARSVVADGQTVHENHFSQLFICSDTLGTDAMLCKNDVAVPTNILGCLMNDQPKYSYLHFQTNTPAWMKLNDTKIQEFDIRIRDHRGRDIPAEQLPNFNMTLIFETVDEIDYQKEHTKQYLREAYVKEHDYRK
Ga0211596_100150623F038407N/AMSALPKGLISKEMVKGVKGVETVRNTLLPVSQAPFAPDGNNRVIFEIPSLHNAFLTQRSYFTFTLKTNASSTKFYRGPCVPFSRMVVKAPNGQILEDLNDFHLLSKVKDVFKSKCDLEAEHATTKAPYTLNEAMWDAEQTQFTSGVPVVMFPQSGLLGQEQQYFIPVNQIASSAGYALHVELHLLPNEDFVFSTGATAPSYSITSMTYETELAQLSNELMRDVIGSKQIAIPYKYVRSHHNQLHGQQSYNVRITDAAQNLENTYSIIHQPQSVKTSVSTNDVHNSDTNPYNFFGGSKKIENSEIAGRADHLTKYVFKYGTKFYPNAPCEMSGDKTLSLQSTITQLGLTNPYIATPEYGTNLMSNQYEARDFVLVNSFKTTGDKVENGINTASTSAPIEIDLTFSQATSNKQLITFVEQANTLYIKNDGISSMVKG
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