NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211677_10000043

Scaffold Ga0211677_10000043


Overview

Basic Information
Taxon OID3300020385 Open in IMG/M
Scaffold IDGa0211677_10000043 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127430
Total Scaffold Genes141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (68.09%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_093
CoordinatesLat. (o)-33.832Long. (o)-73.0366Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008051Metagenome340Y
F015262Metagenome / Metatranscriptome256Y
F016207Metagenome249Y
F037985Metagenome167N
F042011Metagenome159Y
F043079Metagenome157N
F061354Metagenome132Y
F067118Metagenome / Metatranscriptome126Y
F079232Metagenome116N
F083239Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211677_100000431F042011GAGMRKQQYETSARIAMIALIAMVVSLTISIAIGKSSIPEEAIPPTAMHEYAYEWTPTPLEQRKMDSLYRIDAVTKADMDSIKDLIDAILIKLD
Ga0211677_10000043134F067118GGAGMALEDLQSQYGPYNKKGSKGTGEVFDTLANEGTSGLEDGRSKYASKSKNGTKPSGPDVFGNIPAERSYE
Ga0211677_10000043136F015262AGGAMILNRTWQQFVKAKENQNLTLQEQKRKYADERKRYEQHVAFINSGLYNKG
Ga0211677_1000004315F079232GAGMLKAKNQKPKTFIYGIEITKPWSKEMYDHNERTEEHLKDQILAAFQKTYANMAIPMDEDGLRDMAHEIAGYRYGEGFSIDDIKEETIKAIVNMPGFQLHESMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK
Ga0211677_1000004322F043079AGAAGMKNVLNYKGSSMSWKIVSKITDTYDFQDGAQNSYIVYVQDDAGVNIAAKEAYGIADRTKVTKELINEYQEYGIVKIEHQEH
Ga0211677_1000004323F083239GGAMTENYLDLTIDEVYDVITSINIWPQTFDTSKKIAFMNHMITYFEKKEEYEKCAKLQRLIHVMEDSE
Ga0211677_100000434F037985GAGGMEKITTASKSQLRLRFIACIYPIAYVLIWPLVYGILPAYSNYYVFGGIYFTLATSMMAWAMWLHRDIKWSVPAYALVGVALFDCVDYWMLHNILAIIFFLSSTYLMRTDKRFDWLGDISVTWYILLVIPGGVFWFEAIQAVLISVFHLSYVRRLWRVRRL
Ga0211677_1000004343F016207N/AMRYYILYPGNTEADTINDINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKSLKVRVQE
Ga0211677_100000435F061354AGGAGMKVMVWVTQTNVELLERGEIIQYWLREPANALDVVQIQISYDNFIRLRDNQPEHYVTRDHMRFINYSGMQDDNYYTSDTPKSYDEGYGVED
Ga0211677_1000004364F008051N/AMIEILGWISTALVLIGFGLNAKGKFHYAMITWIVGDIGWITYDFYITNFSHLVLSLVIIAINVYGIINLKKQ
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