NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211680_10223650

Scaffold Ga0211680_10223650


Overview

Basic Information
Taxon OID3300020389 Open in IMG/M
Scaffold IDGa0211680_10223650 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)716
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0211680_102236501F022754AGGALNEILVTIMLVIPSPYKMVDWTINEVPTQIQVNHKSGLSVSYTATPVSCNFKPRHKREMIFRSPMDRCYSVFDLSSPRFVRHPDYWYKIELPKPPLV
Ga0211680_102236502F013820GGAGMVPTIISFIDKLWPGGKTYALMGLGVLMTICQMGGWHNFSPEAWGLLGIGGAATWKMGADRK

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