Scaffold Ga0211666_10007970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211666_10007970

Scaffold Ga0211666_10007970

Overview

Basic Information
Taxon OID	3300020392 Open in IMG/M
Scaffold ID	Ga0211666_10007970 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5544
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9488	Long. (^o)	-96.0293	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040850	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211666_100079701	F040850	N/A	PKKTIFSFDSISFFIEKTQICLNLKILKVICNFIKKQVQEKV

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