NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10000124

Scaffold Ga0211497_10000124


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10000124 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40610
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064787Metagenome128Y
F084340Metagenome / Metatranscriptome112Y
F095604Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211497_1000012433F095604N/AMSDQGTEAARALRKLQELTAKYANLEMDADQLNQSISERINATEELKEIIAKATQAKKDRERR
Ga0211497_1000012434F084340GGAGLTNINVTETEHPAAMHKQDINACVHHIRDAVVEYVESEILTPGEFVNCIRTALSDSLNHHTNKAELLKNAQELLTNNITNKEFVDYKL
Ga0211497_1000012441F064787AGGAMSDRLDRLINSSAQDLMGKGSTMYMSLKTAILDHDQKELLKKALFFYQKDACEHHGTVSDTDKGIIESIIDKLHMKHI
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