NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10005776

Scaffold Ga0211497_10005776


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10005776 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7559
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012529Metagenome / Metatranscriptome280Y
F020815Metagenome222N
F044198Metagenome155N
F051059Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0211497_1000577614F051059AGGAGMYYSLDIYSKATKKMLAYHSSDSRKDMLHLKKMYAKNNFVYIKECFGDTDEDKHNYRQSDKYKSS
Ga0211497_1000577615F012529AGGAGMLEDKTYKVKVADYHDAVIYVYMRHVECLNPDEEDAEKKKWKHWKEIVTVIPVCDGSDDYQDKSGNFHNNIRVTVDALSELYGNSPDYEMGISYTMNTHQYINV
Ga0211497_1000577622F020815N/AMRLYMNKQGEWVGTQAEAKKIKADMVEVPTDKPNLLKWLNTFTSSIDAAAEEVIENKPKPSGVTLKAHAWDTIMQCARNASIKDLTMALVVYMDRVHDIADAQKETQQ
Ga0211497_100057767F044198AGGAGMQPKNVPCHIRIKVEPTQKQRGRACRLHGKDFKSIADAARHWKVDYSWAAEQVNRGMNRENFPKKYRSKHG
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Biomedical Sciences Research Center "Alexander Fleming"
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