NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211497_10019382

Scaffold Ga0211497_10019382


Overview

Basic Information
Taxon OID3300020394 Open in IMG/M
Scaffold IDGa0211497_10019382 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3444
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_058
CoordinatesLat. (o)-17.5656Long. (o)42.1988Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061903Metagenome / Metatranscriptome131Y
F103052Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211497_100193825F103052AGGAGMHDLQHTFKLAGDGYWGAEKGRTVTITGYEVARYTQEQIDDYVDWAKVGDIEHVSVMHDSTWDVYTDSAFVDAARTVTGIADLDFTEQGMQDDNVASMEV
Ga0211497_100193826F061903AGGAGMEIKNFRVAYSDYDVTSTLYQKVSADKLAEQLNTVAPTLKDAKHFVHLAQWDLKDHWGVDGYGDPLCTRISGVENTENLEGLFIHMKGCWHYSDDGIYWEPVDEYFIEKVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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