NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211705_10004610

Scaffold Ga0211705_10004610


Overview

Basic Information
Taxon OID3300020395 Open in IMG/M
Scaffold IDGa0211705_10004610 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5491
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7006Long. (o)-17.9915Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001048Metagenome / Metatranscriptome793Y
F006609Metagenome369Y
F007052Metagenome / Metatranscriptome359Y
F046020Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0211705_1000461011F007052GAGMKKNETYFVAKLLKKGEFLSSEIFESLEEARLWAMKETKLLISDTFLKTCKVDDVVVEIDKHFFGYECSTDELFKNSVRV
Ga0211705_1000461012F001048GGAGMKIKSTKQFWWRFNYLVKHGAQITITDRTSPFDLKEHNRIELLVNARVRWELGPEGFMKWDSCGYKDIYTLAKAYGIK
Ga0211705_100046104F006609AGGMTNEILTKLITIIARFDQGITEAKGGEGIDKPAIREVKLILSDDGNTSFVYDLNHNDAAEIVGSFSLLKKGEDEVVTPVPITSLVQDGKIEGIDSKDILLN
Ga0211705_100046107F046020N/AMWVSIILFTFSVSAQLDKHFESEKSCWNFYENHPLLYRQIDDSFHKNYPIRLYQNKKHGLVWLTCEKLKHMRGNDVSIFPLNIPLPTPTKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.