NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211687_10011028

Scaffold Ga0211687_10011028


Overview

Basic Information
Taxon OID3300020396 Open in IMG/M
Scaffold IDGa0211687_10011028 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5125
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018615Metagenome234Y
F061041Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0211687_100110282F018615AGGMKKLILLFIIISSCSTPNSRSDAYYEAVAGHIAQTVLSGECNSKCISSIVSSDLKYATYTQAINVIDKVSKLLPSIYDAIKKELVVKVEEKYKKSF
Ga0211687_100110287F061041N/AVMEDLVHHQEMERKKVSVIKENLVLEINQNHLVMEDLVHHQEMERKKVSVIKENLVLQKKIILNQQASQIILNILEKKYLKVHQRVEKKKTLVLMERRNLKVEVTDLKASPSKNIVKRELKSKTF
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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