NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211687_10011419

Scaffold Ga0211687_10011419


Overview

Basic Information
Taxon OID3300020396 Open in IMG/M
Scaffold IDGa0211687_10011419 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5004
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015659Metagenome253Y
F016879Metagenome244Y
F058519Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0211687_1001141911F058519N/AMTNHLKIIGESYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNISVKECIADKEIQDKINSYVTVDMKDQMKFEFGVKFLEKICQGHVDNIKELPKQKWKTEVEYMKWIEPINIPFRMFIDLEGEIHLNDIKNKFPTVKFSPLKTKQTKDNPNRIGDWVCSHPRIDQRAFTSDLMQISLYSLTNGLKPTLSYASATDRILFTEDNCEELKPQNLKRWVNELIAYEIAWEKKLKAANGSVDELLWLNIPDFSEIRKGSFWWNSIPKEYMEDYLKTYV
Ga0211687_100114195F016879AGGAGMSVVKESFFEASFKTIEKFDSAEVAAASNVSDNAELKVTDIKLDKSVIKTNQEKESNDGDKEQQPVEKI
Ga0211687_100114199F015659GGAMKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDEKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSTSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQKQITNRKI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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