NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211687_10138025

Scaffold Ga0211687_10138025


Overview

Basic Information
Taxon OID3300020396 Open in IMG/M
Scaffold IDGa0211687_10138025 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023047Metagenome / Metatranscriptome211N
F026574Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0211687_101380252F023047N/AMEDLKIKEGDIGLFEFQIKRGVVDENEIDDDDVQSLVDKLKKLCSDNKHNEACELLLPNLSFEFDPSDLDDDPDHFFADTDYIELECSSDNTSVKISYDDELMVTISVNFEIPLNAGISTTKLDEYLPESGAWAVASASPGWIYAASDGDNVWFKGVK
Ga0211687_101380253F026574N/AMNPFKAREKQMKILNILFAIVVYMISFAYPSFANQPEFFIKSVDTNSEIKAPRRSDYGDDLFVRDEGKEYLIQTDELAYWNYDKEIIHSTDLDNDG
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