NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211623_10036819

Scaffold Ga0211623_10036819


Overview

Basic Information
Taxon OID3300020399 Open in IMG/M
Scaffold IDGa0211623_10036819 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1662
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.056Long. (o)4.6606Alt. (m)Depth (m)700
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025142Metagenome203Y
F082813Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211623_100368191F025142N/AFRVKAGSRATLQLTVADSTGTGKDLSNTTTYASGKWKVWKPGGTLIIDGVISFTTRSTGIIQYTLSATDTAIANAGIWAGEVELKDSNGNISEQTQTFQFIMEESY
Ga0211623_100368193F082813N/AMKLYFNANNKATLEALEQCGVKNVMLSHRYSYASINRFHDRFDSIFVVAGTKGNPEKYHEFLKSKKEYYEHATQFDVYFDMDATLKYWKQEKEMGIDWTVPVLQGNFLHHLAQLRPEPDSLVCLGEIRGVAELEDQMRKLPGNLRYHGLAKSKFIKNRIFESVDSAAWISVALAKKSEVWTG
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