NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211636_10004431

Scaffold Ga0211636_10004431


Overview

Basic Information
Taxon OID3300020400 Open in IMG/M
Scaffold IDGa0211636_10004431 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7659
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9721Long. (o)-139.2742Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028038Metagenome / Metatranscriptome193Y
F029926Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0211636_100044315F029926N/AMRLDQVVKPNSKVMSKLAQDAIDKITLDASKGKFQNGRSGFSYKSDTYKKYKANSMQGRNGKLKAFRNQSTDTQTSFVNMRLTGRTLRGMRGSGKTDTAIITYDRGEIVLGNQKRGYDIYDLSNKNKEFIADRFGKELLDRNIKKYVSKTTIIK
Ga0211636_100044316F028038N/AVNKLANLDFYNKEIQNIQQQLIDKLDNLVAGLGTLSDTELMQIAKQIDFFDEMDKLGYGKLINRVGKTFDNEIAKVFAELSKRELGQVSVASIEALKELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINSTFGVGTFISSSETSFLINDAFSRFSNASRAKAFEEFPEIKFQYIGASDNKTREVCQRALKLPPLTRKEIDALGYVSFSNRGGYNCRHDWVRV
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