NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211617_10001320

Scaffold Ga0211617_10001320


Overview

Basic Information
Taxon OID3300020401 Open in IMG/M
Scaffold IDGa0211617_10001320 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12525
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002902Metagenome / Metatranscriptome522Y
F096775Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211617_1000132010F002902AGGAGMATVTNTNGISRSGSGNGPRTRIINLAKSNMTEAELSAALKYLAAGDVAGTNDAHTIAAVAPMTESGIFTSGTTDDVQVMIQGTGAFTAASNFGIGSTGVTSTLLADFHEGY
Ga0211617_1000132020F096775GGAVELIIKAVIGGIIIATVSTVSEKYPTIGAFILGIPLASLVSFVFLYYAGVDIQTFKTLSYQTIYFVLISLLFFPIFVYIMPLYGFWFAILVASSITGLLMFGLYRFL
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