Scaffold Ga0211532_10148433

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211532_10148433

Scaffold Ga0211532_10148433

Overview

Basic Information
Taxon OID	3300020403 Open in IMG/M
Scaffold ID	Ga0211532_10148433 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	964
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_039
Coordinates	Lat. (^o)	18.5679	Long. (^o)	66.4581	Alt. (m)		Depth (m)	25
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059467	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211532_101484331	F059467	AGGAG	MKKLTALLIALGFAGVSHAATVTGTVEVDITENASNDYISTESIKLGIAGDQGVAFGSIKVKTNASDQFVLDEYSIGANISDTASVSYGDQGDIFIGGGLETVGANTIANPSDAGESIKATIGNLSLRGKFTDTDTDISDFDTIQAKYTTTVSKFSIGGSVDHTISTDDNIYAGSVAFALNEKANLSTVVTHDASLTNEVAYESIVKVGGLSAYVDGD

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.