NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10002210

Scaffold Ga0211659_10002210


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10002210 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10455
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080615Metagenome115N
F082763Metagenome / Metatranscriptome113N
F100992Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_1000221014F082763AGAAGMTAYLEGFVTKMIEQYIPEGKDTVAHVDCREFMYEYIFQLIEEEKLPRKLAAIKYLCMNYKRFVYTNLSMLN
Ga0211659_100022102F080615N/AMGAKVKPSVKEYTRDARGKRTNKWVWKHYNVESISTKELKEFYTSPSYKRKKEAIRLELVKRNAI
Ga0211659_100022109F100992N/AMSKTSAKSRYTQLMSWLSGYKSSPVSNFRKQQEKKKSNYRQKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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