NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10029814

Scaffold Ga0211659_10029814


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10029814 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2642
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030052Metagenome186Y
F039092Metagenome164Y
F048927Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100298143F048927N/ALNTLKNNSSTNIIKLNNQTYIPFQLHQLPKYYNEIPLSEQFNLKGYCYINYNSLKSHNFDTHTLNKDLDYTQKR
Ga0211659_100298147F030052N/AMDNNNDMNNKLQQLEDLLKVHDWYYAMSDDNYWYKKGRRQYERIWKLMDELKDGGYFTESENLYDKYSK
Ga0211659_100298148F039092N/AMTVTFKNIGKTYKVGDDNKVKVTHNHDAVVSVCGEYYKNKYTGEWLSELEVEQAMINKYEEDESNKYY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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