NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211496_10000502

Scaffold Ga0211496_10000502


Overview

Basic Information
Taxon OID3300020405 Open in IMG/M
Scaffold IDGa0211496_10000502 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15221
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_062
CoordinatesLat. (o)-22.3407Long. (o)40.3444Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027563Metagenome194Y
F041863Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211496_1000050217F027563N/AMENIKCKYITSDKLTPDNLRFKSFKCNDMSITKANDKTYSECKDLDKDCPCFGYITVGYLRNPQLYVTTPVMKCLFGVQKKGDSNFQMNLQFTDLEEDPNMQQFYDFIEGCEFYAMKSLGLTEEDSDRFISQIYHDKKGIYEPNLNVKLPFQYNQFTIDLYSDHSSGVNIFSINKFQKMECDLYVDRIWRMNDKFYMKWKCKIIHLL
Ga0211496_100005023F041863N/AMESKIVQWVQCDNQIKEYNDKMKEKIKPVREMRDKLSDEILQEINISSIEKSQIPTFNIQALNTSIVPTVNNSYEGFTNKFLSDCFTEYFNSEEKAKELLTFMKNKRKVEKKYSLKRNILMDLND
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